Variant report

Variant	rs7025935
Chromosome Location	chr9:93806346-93806347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93799782..93801478-chr9:93805861..93808673,2	MCF-7	breast:
2	chr9:93805955..93808094-chr9:94184871..94187472,2	MCF-7	breast:
3	chr9:93803621..93806521-chr9:93808727..93811384,2	MCF-7	breast:
4	chr9:93797874..93801408-chr9:93805945..93809060,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10122868	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123625	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10512204	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991749	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1460828	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1542478	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1585456	1.00[EUR][1000 genomes]
rs1585457	1.00[EUR][1000 genomes]
rs1585458	1.00[EUR][1000 genomes]
rs1585459	1.00[EUR][1000 genomes]
rs16907076	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907078	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907083	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907088	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907095	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907097	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs1841446	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28406163	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28498576	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28508244	0.85[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28629371	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28720686	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4991707	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55796701	1.00[EUR][1000 genomes]
rs55837511	1.00[EUR][1000 genomes]
rs56046303	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56099287	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56215441	1.00[EUR][1000 genomes]
rs56286690	1.00[EUR][1000 genomes]
rs56748053	1.00[EUR][1000 genomes]
rs57600683	1.00[EUR][1000 genomes]
rs57756037	1.00[EUR][1000 genomes]
rs57874603	1.00[EUR][1000 genomes]
rs58087771	1.00[EUR][1000 genomes]
rs58145618	1.00[EUR][1000 genomes]
rs58848158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58968598	1.00[EUR][1000 genomes]
rs59262734	1.00[EUR][1000 genomes]
rs59306422	1.00[EUR][1000 genomes]
rs59874266	1.00[EUR][1000 genomes]
rs60129254	1.00[EUR][1000 genomes]
rs60691320	1.00[EUR][1000 genomes]
rs60805834	1.00[EUR][1000 genomes]
rs61300432	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61647505	1.00[EUR][1000 genomes]
rs6479324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479325	1.00[AMR][1000 genomes]
rs6479326	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479327	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020346	1.00[EUR][1000 genomes]
rs7024221	1.00[EUR][1000 genomes]
rs7025659	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7032345	1.00[EUR][1000 genomes]
rs7034744	1.00[EUR][1000 genomes]
rs7035409	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7039162	1.00[EUR][1000 genomes]
rs7039179	1.00[EUR][1000 genomes]
rs7039199	1.00[EUR][1000 genomes]
rs7042483	1.00[EUR][1000 genomes]
rs7047670	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs73492522	1.00[EUR][1000 genomes]
rs73492530	1.00[EUR][1000 genomes]
rs73492532	1.00[EUR][1000 genomes]
rs73492542	1.00[EUR][1000 genomes]
rs73492545	1.00[EUR][1000 genomes]
rs73492551	1.00[EUR][1000 genomes]
rs73505587	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73653522	1.00[EUR][1000 genomes]
rs73653527	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs751279	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753789	0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs753790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs753791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7852422	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7854907	1.00[EUR][1000 genomes]
rs7855222	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7855269	1.00[EUR][1000 genomes]
rs7856489	1.00[EUR][1000 genomes]
rs7856691	1.00[EUR][1000 genomes]
rs7859976	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7867663	1.00[EUR][1000 genomes]
rs7870440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7873869	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93801000-93807000	Weak transcription	Right Atrium	heart
2	chr9:93801800-93809800	Weak transcription	A549	lung
3	chr9:93802000-93806600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:93802000-93806600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:93802400-93810800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:93803000-93807000	Weak transcription	HepG2	liver
7	chr9:93803400-93806800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:93805000-93807000	Enhancers	Ovary	ovary
9	chr9:93805400-93806800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:93806000-93806400	Weak transcription	Lung	lung
11	chr9:93806000-93806800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:93806000-93807800	Enhancers	Colon Smooth Muscle	Colon
13	chr9:93806000-93809400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:93806200-93809400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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