Variant report

Variant	rs7867663
Chromosome Location	chr9:93754516-93754517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:93754307-93754691	MCF-7	breast:	n/a	n/a
2	MAFK	chr9:93754087-93754532	HepG2	liver:	n/a	chr9:93754230-93754245
3	CEBPB	chr9:93754321-93754680	Hela-S3	cervix:	n/a	n/a
4	SRF	chr9:93754424-93754575	HepG2	liver:	n/a	chr9:93754527-93754545
5	POLR2A	chr9:93754447-93755155	MCF10A-Er-Src	breast:	n/a	n/a
6	SP1	chr9:93754165-93754777	A549	lung:	n/a	n/a
7	FOSL2	chr9:93754258-93755562	A549	lung:	n/a	n/a
8	FOS	chr9:93754440-93754673	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT3	chr9:93754377-93754633	MCF10A-Er-Src	breast:	n/a	chr9:93754566-93754577
10	STAT3	chr9:93754389-93754657	MCF10A-Er-Src	breast:	n/a	chr9:93754566-93754577
11	EP300	chr9:93754184-93754707	A549	lung:	n/a	n/a
12	CEBPB	chr9:93754320-93754630	A549	lung:	n/a	n/a
13	FOXA1	chr9:93754295-93754560	T-47D	breast:	n/a	n/a
14	ARID3A	chr9:93754331-93754646	HepG2	liver:	n/a	n/a
15	RAD21	chr9:93754312-93754582	Hela-S3	cervix:	n/a	n/a
16	GATA3	chr9:93754075-93755660	A549	lung:	n/a	n/a
17	GATA3	chr9:93754289-93754610	T-47D	breast:	n/a	n/a
18	FOXA1	chr9:93754231-93754551	HepG2	liver:	n/a	n/a
19	HDAC2	chr9:93754278-93754611	HepG2	liver:	n/a	n/a
20	STAT3	chr9:93754469-93755417	MCF10A-Er-Src	breast:	n/a	chr9:93754566-93754577 chr9:93755381-93755392
21	STAT3	chr9:93754382-93755424	MCF10A-Er-Src	breast:	n/a	chr9:93754566-93754577 chr9:93755381-93755392
22	CEBPB	chr9:93754323-93754651	IMR90	lung:	n/a	n/a
23	EP300	chr9:93754078-93755612	A549	lung:	n/a	n/a
24	FOXA2	chr9:93754241-93754673	A549	lung:	n/a	n/a
25	CEBPB	chr9:93754328-93754609	HepG2	liver:	n/a	n/a
26	CEBPB	chr9:93754267-93754727	A549	lung:	n/a	n/a
27	CEBPB	chr9:93754274-93754785	A549	lung:	n/a	n/a
28	HNF4A	chr9:93754411-93754595	HepG2	liver:	n/a	n/a
29	POLR2A	chr9:93754409-93754550	MCF10A-Er-Src	breast:	n/a	n/a
30	MAFK	chr9:93754201-93755390	Hela-S3	cervix:	n/a	chr9:93754230-93754245
31	FOS	chr9:93754396-93755454	MCF10A-Er-Src	breast:	n/a	chr9:93755212-93755223
32	EP300	chr9:93754316-93754723	Hela-S3	cervix:	n/a	n/a
33	TCF12	chr9:93754074-93754785	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:93752121..93756766-chr9:93756926..93762091,5	MCF-7	breast:
2	chr9:93748152..93750043-chr9:93753873..93756250,2	MCF-7	breast:
3	chr9:93726945..93729770-chr9:93753086..93755421,2	MCF-7	breast:
4	chr9:93740191..93743980-chr9:93753139..93756785,4	MCF-7	breast:
5	chr9:93676355..93678858-chr9:93753040..93754661,2	MCF-7	breast:
6	chr9:93699190..93702155-chr9:93754434..93756320,2	MCF-7	breast:
7	chr9:93747037..93749166-chr9:93752714..93754815,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260454	TF binding region
ENSG00000228216	Chromatin interaction
ENSG00000260454	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10123625	1.00[EUR][1000 genomes]
rs10512204	1.00[EUR][1000 genomes]
rs10991749	1.00[EUR][1000 genomes]
rs1460828	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1542478	1.00[EUR][1000 genomes]
rs1585456	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585459	0.88[CHB][hapmap];0.80[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907076	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907078	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907083	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907088	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907095	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907097	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907114	1.00[EUR][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs1841446	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28406163	1.00[EUR][1000 genomes]
rs28498576	1.00[EUR][1000 genomes]
rs28508244	0.83[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes]
rs28629371	1.00[EUR][1000 genomes]
rs28720686	1.00[EUR][1000 genomes]
rs296729	0.98[ASN][1000 genomes]
rs4991707	1.00[EUR][1000 genomes]
rs55796701	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55837511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56046303	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56099287	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56215441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56286690	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56748053	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57191437	0.80[AFR][1000 genomes]
rs57600683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57756037	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57874603	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58087771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58145618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848158	1.00[EUR][1000 genomes]
rs58968598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59262734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59874266	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60129254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60691320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60805834	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61300432	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61647505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479324	1.00[EUR][1000 genomes]
rs6479326	1.00[EUR][1000 genomes]
rs6479327	1.00[EUR][1000 genomes]
rs7020346	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024221	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025659	1.00[EUR][1000 genomes]
rs7025935	1.00[EUR][1000 genomes]
rs7032345	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7034744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035409	0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039162	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039179	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039199	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042483	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7046222	0.96[AFR][1000 genomes]
rs7047670	0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492505	0.82[AFR][1000 genomes]
rs73492518	0.89[AFR][1000 genomes]
rs73492522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492544	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73492545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492551	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73505587	1.00[EUR][1000 genomes]
rs73653521	0.97[AFR][1000 genomes]
rs73653522	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653527	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs751279	1.00[EUR][1000 genomes]
rs753789	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs753790	1.00[EUR][1000 genomes]
rs753791	1.00[EUR][1000 genomes]
rs7852422	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854507	1.00[AFR][1000 genomes]
rs7854907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855222	0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856489	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856691	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859976	0.88[CHB][hapmap];0.82[JPT][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870440	1.00[EUR][1000 genomes]
rs7873869	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93752400-93755200	Enhancers	Liver	Liver
2	chr9:93753600-93754600	Enhancers	A549	lung
3	chr9:93753600-93755000	Enhancers	NHDF-Ad	bronchial
4	chr9:93753800-93754800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:93753800-93754800	Enhancers	Adipose Nuclei	Adipose
6	chr9:93753800-93755000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:93753800-93755000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:93753800-93755000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:93753800-93755000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:93753800-93755000	Enhancers	HMEC	breast
11	chr9:93753800-93755000	Enhancers	NHLF	lung
12	chr9:93753800-93755200	Enhancers	Hela-S3	cervix
13	chr9:93753800-93755200	Enhancers	Osteobl	bone
14	chr9:93753800-93755400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:93753800-93755600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:93753800-93755600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:93754000-93754800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:93754000-93755000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:93754000-93755200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr9:93754000-93755200	Enhancers	HSMM	muscle
21	chr9:93754000-93755200	Enhancers	HSMMtube	muscle
22	chr9:93754000-93755600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:93754000-93755600	Enhancers	HUVEC	blood vessel
24	chr9:93754000-93755600	Enhancers	NH-A	brain
25	chr9:93754200-93754600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:93754200-93754600	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:93754200-93755000	Enhancers	HepG2	liver
28	chr9:93754200-93755200	Enhancers	NHEK	skin
29	chr9:93754400-93755000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:93754400-93755200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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