Variant report

Variant	rs6479324
Chromosome Location	chr9:93802899-93802900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93800619..93803174-chr9:94123561..94125235,2	K562	blood:
2	chr9:93797668..93803133-chr9:94183972..94188624,9	MCF-7	breast:
3	chr9:93800096..93803076-chr9:93836959..93839834,2	K562	blood:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction
ENSG00000233081	Chromatin interaction
ENSG00000148090	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10122868	1.00[AMR][1000 genomes]
rs10123625	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10512204	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10991749	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1460828	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1542478	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1585456	1.00[EUR][1000 genomes]
rs1585457	1.00[EUR][1000 genomes]
rs1585458	1.00[EUR][1000 genomes]
rs1585459	1.00[EUR][1000 genomes]
rs16907076	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907078	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907083	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907088	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907095	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907097	0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs1841446	0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28406163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28498576	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28508244	0.85[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28629371	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28720686	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4991707	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55796701	1.00[EUR][1000 genomes]
rs55837511	1.00[EUR][1000 genomes]
rs56046303	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56099287	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56215441	1.00[EUR][1000 genomes]
rs56286690	1.00[EUR][1000 genomes]
rs56748053	1.00[EUR][1000 genomes]
rs57600683	1.00[EUR][1000 genomes]
rs57756037	1.00[EUR][1000 genomes]
rs57874603	1.00[EUR][1000 genomes]
rs58087771	1.00[EUR][1000 genomes]
rs58145618	1.00[EUR][1000 genomes]
rs58848158	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58968598	1.00[EUR][1000 genomes]
rs59262734	1.00[EUR][1000 genomes]
rs59306422	1.00[EUR][1000 genomes]
rs59874266	1.00[EUR][1000 genomes]
rs60129254	1.00[EUR][1000 genomes]
rs60691320	1.00[EUR][1000 genomes]
rs60805834	1.00[EUR][1000 genomes]
rs61300432	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61647505	1.00[EUR][1000 genomes]
rs6479325	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6479326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479327	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020346	1.00[EUR][1000 genomes]
rs7024221	1.00[EUR][1000 genomes]
rs7025659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7025935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032345	1.00[EUR][1000 genomes]
rs7034744	1.00[EUR][1000 genomes]
rs7035409	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7039162	1.00[EUR][1000 genomes]
rs7039179	1.00[EUR][1000 genomes]
rs7039199	1.00[EUR][1000 genomes]
rs7042483	1.00[EUR][1000 genomes]
rs7047670	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs73492522	1.00[EUR][1000 genomes]
rs73492530	1.00[EUR][1000 genomes]
rs73492532	1.00[EUR][1000 genomes]
rs73492542	1.00[EUR][1000 genomes]
rs73492545	1.00[EUR][1000 genomes]
rs73492551	1.00[EUR][1000 genomes]
rs73505587	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73653522	1.00[EUR][1000 genomes]
rs73653527	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs751279	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753789	0.85[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs753790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs753791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7852422	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7854907	1.00[EUR][1000 genomes]
rs7855222	0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs7855269	1.00[EUR][1000 genomes]
rs7856489	1.00[EUR][1000 genomes]
rs7856691	1.00[EUR][1000 genomes]
rs7859976	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7867663	1.00[EUR][1000 genomes]
rs7870440	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7873869	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3443359	chr9:93798631-93803029	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93799200-93803000	Enhancers	Ovary	ovary
2	chr9:93800600-93805600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:93801000-93804200	Weak transcription	Fetal Heart	heart
4	chr9:93801000-93804400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:93801000-93807000	Weak transcription	Right Atrium	heart
6	chr9:93801200-93803000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:93801200-93803200	Weak transcription	Placenta	Placenta
8	chr9:93801200-93804600	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:93801400-93803000	Enhancers	HepG2	liver
10	chr9:93801400-93804000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:93801800-93803000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:93801800-93805800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:93801800-93809800	Weak transcription	A549	lung
14	chr9:93802000-93806600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:93802000-93806600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:93802200-93805600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:93802200-93805800	Weak transcription	Lung	lung
18	chr9:93802400-93810800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:93802600-93805400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:93802800-93803400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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