Variant report

Variant	rs7852161
Chromosome Location	chr9:93775477-93775478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1460828	0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs16907097	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs56099287	0.85[AFR][1000 genomes]
rs7027295	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73650905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650906	0.88[AFR][1000 genomes]
rs7852422	0.94[AFR][1000 genomes]
rs7873869	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93765200-93780400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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