Variant report

Variant	rs390574
Chromosome Location	chr9:93723339-93723340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1041381	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1330682	1.00[CEU][hapmap]
rs1460828	0.85[MEX][hapmap]
rs158683	0.91[EUR][1000 genomes]
rs1675292	0.91[EUR][1000 genomes]
rs1675293	0.91[EUR][1000 genomes]
rs1675294	1.00[CEU][hapmap]
rs1675295	0.91[EUR][1000 genomes]
rs1675296	0.91[EUR][1000 genomes]
rs1675297	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1675298	0.91[EUR][1000 genomes]
rs1675302	0.91[EUR][1000 genomes]
rs1675303	0.91[EUR][1000 genomes]
rs1675305	0.91[EUR][1000 genomes]
rs1675306	0.91[EUR][1000 genomes]
rs1675307	0.91[EUR][1000 genomes]
rs169743	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1755982	0.91[EUR][1000 genomes]
rs1755983	0.91[EUR][1000 genomes]
rs184114	0.91[EUR][1000 genomes]
rs190029	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2774255	0.91[EUR][1000 genomes]
rs291746	0.91[EUR][1000 genomes]
rs291747	0.91[EUR][1000 genomes]
rs291749	0.91[EUR][1000 genomes]
rs291752	0.91[EUR][1000 genomes]
rs291754	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs291755	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs291757	0.91[EUR][1000 genomes]
rs291758	0.83[EUR][1000 genomes]
rs291759	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs291761	0.91[EUR][1000 genomes]
rs291763	0.91[EUR][1000 genomes]
rs296653	0.91[EUR][1000 genomes]
rs296654	0.91[EUR][1000 genomes]
rs296656	0.91[EUR][1000 genomes]
rs296658	1.00[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs296659	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs296660	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296662	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296670	0.91[EUR][1000 genomes]
rs296674	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs296675	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs296678	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs296685	0.82[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs296687	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs296689	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs296692	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs296694	0.90[EUR][1000 genomes]
rs296697	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296704	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296705	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296706	0.84[AMR][1000 genomes]
rs296707	0.91[EUR][1000 genomes]
rs296712	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs296720	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs296723	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs296727	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs296729	0.81[EUR][1000 genomes]
rs364622	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs376648	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs426365	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7035409	0.85[MEX][hapmap]
rs7047670	0.85[MEX][hapmap]
rs7859976	0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93718600-93723600	Weak transcription	Aorta	Aorta
2	chr9:93718800-93723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:93718800-93726800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:93718800-93727200	Weak transcription	NHEK	skin
5	chr9:93721000-93723400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:93721200-93726600	Weak transcription	Esophagus	oesophagus
7	chr9:93721200-93726600	Weak transcription	Ovary	ovary
8	chr9:93721600-93726400	Weak transcription	Stomach Mucosa	stomach
9	chr9:93722400-93724600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr9:93722600-93724200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:93722800-93724800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:93722800-93724800	Enhancers	Fetal Heart	heart
13	chr9:93723000-93724200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:93723000-93724200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:93723000-93724200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:93723000-93724200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:93723000-93724200	Enhancers	NH-A	brain
18	chr9:93723000-93724400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:93723000-93726600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:93723200-93723400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:93723200-93723400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
22	chr9:93723200-93723400	Flanking Active TSS	Osteobl	bone
23	chr9:93723200-93724200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:93723200-93724200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:93723200-93724200	Enhancers	Adipose Nuclei	Adipose
26	chr9:93723200-93724200	Enhancers	HMEC	breast
27	chr9:93723200-93724200	Enhancers	NHDF-Ad	bronchial

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