Variant report

Variant	rs1675294
Chromosome Location	chr9:93677326-93677327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93677265..93679731-chr9:93797817..93800776,2	MCF-7	breast:
2	chr9:93669822..93671839-chr9:93675498..93677412,2	K562	blood:
3	chr9:93676925..93677709-chr9:94443747..94444466,3	MCF-7	breast:
4	chr9:93676448..93679298-chr9:93745001..93748121,3	MCF-7	breast:
5	chr9:93676720..93679314-chr9:93684985..93688336,3	MCF-7	breast:
6	chr9:93676992..93677518-chr9:93726246..93727125,2	MCF-7	breast:
7	chr9:93677031..93677848-chr9:93745356..93746083,4	MCF-7	breast:
8	chr9:93676355..93678858-chr9:93753040..93754661,2	MCF-7	breast:
9	chr9:93674734..93679080-chr9:94183928..94188692,8	MCF-7	breast:
10	chr9:93676958..93678063-chr9:93745221..93746937,9	MCF-7	breast:
11	chr9:93676966..93677769-chr9:94188109..94189036,3	MCF-7	breast:
12	chr9:93667547..93672614-chr9:93675610..93678546,4	MCF-7	breast:
13	chr9:93675751..93682846-chr9:94184185..94190004,10	MCF-7	breast:
14	chr9:93676920..93679148-chr9:93718490..93720720,2	MCF-7	breast:
15	chr9:93677291..93677869-chr9:94195160..94195912,2	MCF-7	breast:
16	chr9:93676159..93678392-chr9:93740956..93744804,3	MCF-7	breast:
17	chr9:93675804..93678355-chr9:93746477..93748516,2	MCF-7	breast:
18	chr9:93677111..93677818-chr9:94188112..94189007,2	MCF-7	breast:
19	chr9:93677133..93677996-chr9:93715404..93716043,2	MCF-7	breast:
20	chr9:93671159..93672767-chr9:93675505..93677401,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1041381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991691	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12345699	0.93[AFR][1000 genomes]
rs1330682	1.00[CEU][hapmap]
rs158683	0.84[EUR][1000 genomes]
rs1614353	0.95[ASN][1000 genomes]
rs1615082	0.95[ASN][1000 genomes]
rs167100	0.95[ASN][1000 genomes]
rs1675292	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675293	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675296	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675298	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675302	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675303	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675305	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1675306	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1675307	0.84[EUR][1000 genomes]
rs1675310	0.85[ASN][1000 genomes]
rs1675312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1675313	0.95[ASN][1000 genomes]
rs169743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755982	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184114	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs190029	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1964918	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2774255	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs291746	0.84[EUR][1000 genomes]
rs291747	0.84[EUR][1000 genomes]
rs291749	0.84[EUR][1000 genomes]
rs291752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291757	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291758	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs291759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291761	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291763	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs291766	0.85[ASN][1000 genomes]
rs291767	0.90[ASN][1000 genomes]
rs296653	0.84[EUR][1000 genomes]
rs296654	0.84[EUR][1000 genomes]
rs296656	0.84[EUR][1000 genomes]
rs296658	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs296659	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs296660	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs296662	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs296670	0.84[EUR][1000 genomes]
rs296674	1.00[CEU][hapmap]
rs296675	1.00[CEU][hapmap]
rs296692	1.00[CEU][hapmap]
rs296697	1.00[CEU][hapmap]
rs296723	1.00[CEU][hapmap]
rs296727	1.00[CEU][hapmap]
rs364622	1.00[CEU][hapmap]
rs7035017	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs928208	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93669600-93677600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:93674000-93681800	Weak transcription	Pancreas	Pancrea
4	chr9:93675400-93677400	Weak transcription	Placenta	Placenta
5	chr9:93677000-93677400	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:93677000-93677400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:93677000-93677400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:93677000-93677400	Enhancers	Fetal Brain Male	brain
9	chr9:93677000-93677400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr9:93677000-93677400	Enhancers	Fetal Muscle Leg	muscle
11	chr9:93677000-93677400	Bivalent Enhancer	Fetal Stomach	stomach
12	chr9:93677000-93677400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr9:93677000-93677800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:93677000-93677800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:93677000-93677800	Enhancers	Fetal Heart	heart
16	chr9:93677000-93678000	Enhancers	Stomach Mucosa	stomach
17	chr9:93677000-93679200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:93677200-93677600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr9:93677200-93677800	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr9:93677200-93677800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:93677200-93677800	Enhancers	HMEC	breast
22	chr9:93677200-93678000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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