Variant report

Variant	rs10991691
Chromosome Location	chr9:93683767-93683768
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93683300..93685317-chr9:93705427..93707006,2	MCF-7	breast:
2	chr9:93682025..93684983-chr9:93787806..93789762,2	MCF-7	breast:
3	chr9:93683207..93685388-chr9:94184914..94187994,3	MCF-7	breast:
4	chr9:93677665..93682323-chr9:93683536..93687193,5	MCF-7	breast:
5	chr9:93682204..93686521-chr9:93708730..93712212,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10117309	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10820818	0.83[EUR][1000 genomes]
rs10991701	0.83[EUR][1000 genomes]
rs10991702	0.83[EUR][1000 genomes]
rs10991707	0.83[EUR][1000 genomes]
rs10991708	0.83[EUR][1000 genomes]
rs10993757	0.91[EUR][1000 genomes]
rs10993758	0.91[EUR][1000 genomes]
rs10993761	0.91[EUR][1000 genomes]
rs10993763	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993764	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12238239	0.91[EUR][1000 genomes]
rs12345699	0.87[AFR][1000 genomes]
rs12380181	0.88[EUR][1000 genomes]
rs12380442	0.91[EUR][1000 genomes]
rs1471292	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1475553	0.83[EUR][1000 genomes]
rs1475554	0.83[EUR][1000 genomes]
rs1585461	0.91[EUR][1000 genomes]
rs1675294	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs28476556	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2892367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035017	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7039789	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3437897	chr9:93680731-93685229	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93681400-93686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:93681400-93687200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:93681600-93683800	Enhancers	Right Atrium	heart
4	chr9:93681600-93684000	Enhancers	Esophagus	oesophagus
5	chr9:93682200-93684000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:93682200-93684000	Enhancers	Fetal Stomach	stomach
7	chr9:93682200-93684200	Enhancers	Adipose Nuclei	Adipose
8	chr9:93682400-93684000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:93682400-93684000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:93682400-93684800	Enhancers	Pancreas	Pancrea
11	chr9:93682600-93683800	Enhancers	Brain Anterior Caudate	brain
12	chr9:93682600-93683800	Enhancers	Fetal Lung	lung
13	chr9:93682600-93684600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:93683000-93684000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
16	chr9:93683200-93683800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:93683200-93683800	Enhancers	Fetal Brain Male	brain
18	chr9:93683200-93684000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:93683200-93684000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr9:93683200-93684000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:93683200-93684000	Enhancers	Liver	Liver
22	chr9:93683400-93683800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:93683400-93683800	Weak transcription	Aorta	Aorta
24	chr9:93683400-93683800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:93683400-93683800	Enhancers	Gastric	stomach
26	chr9:93683400-93683800	Enhancers	Ovary	ovary
27	chr9:93683400-93683800	Enhancers	Osteobl	bone
28	chr9:93683400-93684000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:93683400-93684000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:93683400-93684000	Enhancers	Fetal Brain Female	brain
31	chr9:93683400-93684000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr9:93683400-93684600	Enhancers	Fetal Heart	heart
33	chr9:93683600-93683800	Enhancers	Brain Germinal Matrix	brain
34	chr9:93683600-93683800	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr9:93683600-93683800	Enhancers	NHDF-Ad	bronchial
36	chr9:93683600-93684000	Enhancers	Brain Hippocampus Middle	brain
37	chr9:93683600-93684000	Enhancers	Fetal Muscle Leg	muscle
38	chr9:93683600-93684000	Enhancers	NHEK	skin
39	chr9:93683600-93684600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr9:93683600-93684600	Enhancers	HMEC	breast

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