Variant report

Variant	rs12380181
Chromosome Location	chr9:93663983-93663984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93663803..93666735-chr9:93669884..93671641,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10117309	0.88[EUR][1000 genomes]
rs10991691	0.88[EUR][1000 genomes]
rs10993757	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993758	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993761	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993763	0.88[EUR][1000 genomes]
rs10993764	0.86[EUR][1000 genomes]
rs12238239	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12380442	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1471292	0.88[EUR][1000 genomes]
rs1585461	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28476556	0.88[EUR][1000 genomes]
rs2892367	0.88[EUR][1000 genomes]
rs7039789	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93634000-93666200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:93643000-93666600	Weak transcription	Stomach Mucosa	stomach
3	chr9:93643600-93665400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:93646200-93664800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr9:93647400-93666600	Strong transcription	Primary B cells from cord blood	blood
6	chr9:93647600-93664800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:93648200-93665000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:93651600-93664200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:93652600-93667200	Weak transcription	Gastric	stomach
10	chr9:93655400-93664000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:93658000-93664000	Weak transcription	Lung	lung
12	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:93660400-93671400	Weak transcription	GM12878-XiMat	blood
14	chr9:93660800-93665600	Weak transcription	Esophagus	oesophagus
15	chr9:93661000-93664600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:93661400-93664000	Weak transcription	Fetal Stomach	stomach
17	chr9:93662000-93664000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:93662000-93664000	Weak transcription	Fetal Thymus	thymus
19	chr9:93662000-93664000	Weak transcription	Pancreas	Pancrea
20	chr9:93662000-93664600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr9:93662000-93664600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:93662000-93666400	Weak transcription	Fetal Kidney	kidney
23	chr9:93662000-93670400	Weak transcription	Fetal Lung	lung
24	chr9:93662000-93677000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:93662200-93667600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:93662400-93671200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr9:93662600-93664000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr9:93663000-93666200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:93663200-93664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:93663200-93672200	Weak transcription	Spleen	Spleen
31	chr9:93663200-93673800	Weak transcription	Thymus	Thymus
32	chr9:93663400-93673600	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links