Variant report

Variant	rs10117309
Chromosome Location	chr9:93693246-93693247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93688437..93690680-chr9:93691698..93693614,2	MCF-7	breast:
2	chr9:93692079..93694930-chr9:93695020..93697604,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10820818	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10991691	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10991701	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10991702	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10991707	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10991708	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10991710	1.00[CHB][hapmap]
rs10991711	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10991723	1.00[CHB][hapmap]
rs10991724	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10993757	0.91[EUR][1000 genomes]
rs10993758	0.91[EUR][1000 genomes]
rs10993761	0.91[EUR][1000 genomes]
rs10993763	1.00[EUR][1000 genomes]
rs10993764	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12238239	0.91[EUR][1000 genomes]
rs12380181	0.88[EUR][1000 genomes]
rs12380442	0.91[EUR][1000 genomes]
rs1471292	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1475553	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1475554	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1585461	0.91[EUR][1000 genomes]
rs28476556	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2892367	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291760	0.82[TSI][hapmap]
rs7039789	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv416826	chr9:93688735-93698322	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93692800-93701600	Weak transcription	Fetal Brain Female	brain

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