Variant report

Variant	rs7039789
Chromosome Location	chr9:93674268-93674269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10117309	0.95[EUR][1000 genomes]
rs10991691	0.95[EUR][1000 genomes]
rs10993757	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993758	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10993761	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10993763	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10993764	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12238239	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12380181	0.93[EUR][1000 genomes]
rs12380442	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1471292	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1585461	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28476556	0.95[EUR][1000 genomes]
rs2892367	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93662000-93677000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:93669600-93677600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93671200-93674600	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:93671600-93674800	Weak transcription	Fetal Stomach	stomach
6	chr9:93673400-93674400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:93673600-93674400	Enhancers	Primary B cells from cord blood	blood
8	chr9:93673800-93674800	Enhancers	Fetal Muscle Trunk	muscle
9	chr9:93674000-93681800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
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