Variant report

Variant	rs115378554
Chromosome Location	chr3:121409654-121409655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv432480	chr3:121355723-121629928	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv432482	chr3:121364236-121629634	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv432481	chr3:121364236-121637178	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv829703	chr3:121383290-121534493	Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv980073	chr3:121409447-121412574	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121380600-121413800	Weak transcription	Stomach Mucosa	stomach
2	chr3:121386600-121447200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:121396800-121435600	Weak transcription	Psoas Muscle	Psoas
4	chr3:121399000-121410000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr3:121399000-121415400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:121399000-121425400	Weak transcription	Pancreas	Pancrea
7	chr3:121399000-121426400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:121399000-121440400	Weak transcription	K562	blood
9	chr3:121399200-121410200	Weak transcription	Thymus	Thymus
10	chr3:121399200-121410600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:121399200-121410800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:121399200-121416800	Weak transcription	Fetal Stomach	stomach
13	chr3:121399400-121409800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:121399600-121410000	Weak transcription	Hela-S3	cervix
15	chr3:121400800-121410000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:121400800-121410800	Weak transcription	Brain Substantia Nigra	brain
17	chr3:121400800-121411200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:121401200-121410200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:121401200-121410600	Weak transcription	Fetal Brain Male	brain
20	chr3:121401200-121410800	Weak transcription	Lung	lung
21	chr3:121401200-121416800	Weak transcription	Spleen	Spleen
22	chr3:121401200-121429400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:121401200-121434000	Weak transcription	Gastric	stomach
24	chr3:121401400-121410000	Weak transcription	NHEK	skin
25	chr3:121402600-121409800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:121403800-121414600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr3:121404000-121410000	Weak transcription	A549	lung
28	chr3:121404000-121432800	Weak transcription	Brain Angular Gyrus	brain
29	chr3:121405800-121410000	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:121406000-121410000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:121406200-121410200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:121406400-121409800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:121406600-121409800	Weak transcription	NHDF-Ad	bronchial
34	chr3:121407400-121429400	Weak transcription	Esophagus	oesophagus
35	chr3:121408200-121417400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:121408200-121422400	Strong transcription	Placenta	Placenta
37	chr3:121408200-121428400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:121408400-121411400	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr3:121408400-121413000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:121408400-121421000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:121408400-121421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:121408600-121410800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:121408600-121411000	Strong transcription	Fetal Kidney	kidney
44	chr3:121408600-121411400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:121408600-121411400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:121408600-121411400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:121408600-121411400	Strong transcription	Aorta	Aorta
48	chr3:121408600-121411400	Strong transcription	Fetal Lung	lung
49	chr3:121408600-121411400	Strong transcription	Fetal Muscle Leg	muscle
50	chr3:121408600-121411400	Strong transcription	Ovary	ovary

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