Variant report

Variant	rs115415232
Chromosome Location	chr3:179369833-179369834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:179369688-179369856	MCF10A-Er-Src	breast:	n/a	n/a
2	MXI1	chr3:179369619-179373450	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:179062475..179065895-chr3:179368714..179370965,3	MCF-7	breast:
2	chr3:179369074..179371005-chr9:91932390..91934959,2	MCF-7	breast:
3	chr3:179368583..179370477-chr3:179391121..179393841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243977	TF binding region
USP13	TF binding region
ENSG00000171109	Chromatin interaction
ENSG00000187742	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3400340	chr3:179369683-179372231	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179367800-179370200	Weak transcription	Placenta	Placenta
2	chr3:179369600-179370000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:179369600-179370000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:179369600-179370000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:179369600-179370000	Enhancers	Brain Hippocampus Middle	brain
6	chr3:179369600-179370000	Enhancers	Fetal Muscle Leg	muscle
7	chr3:179369600-179370400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:179369600-179372400	Active TSS	NHDF-Ad	bronchial
9	chr3:179369600-179372600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr3:179369800-179370000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:179369800-179370000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:179369800-179370000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:179369800-179370000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr3:179369800-179370000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr3:179369800-179370000	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr3:179369800-179370000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:179369800-179370000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:179369800-179370000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:179369800-179370000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:179369800-179370000	Enhancers	Liver	Liver
21	chr3:179369800-179370000	Enhancers	Brain Angular Gyrus	brain
22	chr3:179369800-179370000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr3:179369800-179370000	Enhancers	Fetal Heart	heart
24	chr3:179369800-179370000	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr3:179369800-179370000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr3:179369800-179370000	Enhancers	Hela-S3	cervix
27	chr3:179369800-179370000	Enhancers	HepG2	liver
28	chr3:179369800-179370000	Enhancers	HUVEC	blood vessel
29	chr3:179369800-179370200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:179369800-179370200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr3:179369800-179370200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
32	chr3:179369800-179370200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:179369800-179370200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:179369800-179370200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr3:179369800-179370200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:179369800-179370200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr3:179369800-179370200	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr3:179369800-179370200	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr3:179369800-179370200	Bivalent Enhancer	Fetal Thymus	thymus
40	chr3:179369800-179370200	Flanking Active TSS	A549	lung
41	chr3:179369800-179370200	Flanking Active TSS	GM12878-XiMat	blood
42	chr3:179369800-179370200	Flanking Active TSS	NH-A	brain
43	chr3:179369800-179370200	Flanking Active TSS	NHLF	lung
44	chr3:179369800-179370200	Flanking Active TSS	Osteobl	bone
45	chr3:179369800-179370400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:179369800-179370400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr3:179369800-179370400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:179369800-179370400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:179369800-179370400	Flanking Active TSS	Dnd41	blood
50	chr3:179369800-179370400	Flanking Active TSS	NHEK	skin

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