Variant report
| Variant | rs11542115 |
|---|---|
| Chromosome Location | chr12:49666815-49666816 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:49659200-49673600 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr12:49659600-49668600 | Weak transcription | Brain Cingulate Gyrus | brain |
| 3 | chr12:49659600-49669600 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 4 | chr12:49659600-49673600 | Weak transcription | Brain Hippocampus Middle | brain |
| 5 | chr12:49659800-49668600 | Weak transcription | Right Atrium | heart |
| 6 | chr12:49661000-49668000 | Strong transcription | H9 Cell Line | embryonic stem cell |
| 7 | chr12:49661000-49669800 | Strong transcription | Fetal Stomach | stomach |
| 8 | chr12:49661600-49667400 | Weak transcription | Fetal Heart | heart |
| 9 | chr12:49661600-49668000 | Strong transcription | Fetal Thymus | thymus |
| 10 | chr12:49661600-49670600 | Weak transcription | Psoas Muscle | Psoas |
| 11 | chr12:49661800-49668000 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 12 | chr12:49662000-49667800 | Strong transcription | iPS-18 Cell Line | embryonic stem cell |
| 13 | chr12:49662000-49667800 | Strong transcription | Dnd41 | blood |
| 14 | chr12:49662000-49668000 | Strong transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 15 | chr12:49662000-49668600 | Strong transcription | Primary hematopoietic stem cells short term culture | blood |
| 16 | chr12:49662200-49668600 | Strong transcription | Primary T cells from cord blood | blood |
| 17 | chr12:49662600-49668000 | Genic enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 18 | chr12:49662600-49668400 | Strong transcription | Rectal Mucosa Donor 29 | rectum |
| 19 | chr12:49662600-49669000 | Strong transcription | Fetal Muscle Leg | muscle |
| 20 | chr12:49662800-49667200 | Strong transcription | iPS-15b Cell Line | embryonic stem cell |
| 21 | chr12:49662800-49667400 | Strong transcription | GM12878-XiMat | blood |
| 22 | chr12:49662800-49667800 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
| 23 | chr12:49662800-49667800 | Strong transcription | iPS-20b Cell Line | embryonic stem cell |
| 24 | chr12:49662800-49667800 | Strong transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 25 | chr12:49662800-49673400 | Weak transcription | Brain Anterior Caudate | brain |
| 26 | chr12:49662800-49673400 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 27 | chr12:49662800-49673400 | Weak transcription | Brain Substantia Nigra | brain |
| 28 | chr12:49663000-49667400 | Strong transcription | HepG2 | liver |
| 29 | chr12:49663000-49667800 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 30 | chr12:49663000-49668000 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 31 | chr12:49663000-49668000 | Strong transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 32 | chr12:49663000-49668200 | Strong transcription | Fetal Muscle Trunk | muscle |
| 33 | chr12:49663000-49668400 | Strong transcription | Sigmoid Colon | Sigmoid Colon |
| 34 | chr12:49663000-49669600 | Strong transcription | Thymus | Thymus |
| 35 | chr12:49663000-49669800 | Strong transcription | Fetal Intestine Small | intestine |
| 36 | chr12:49663200-49667400 | Strong transcription | Primary T regulatory cells fromperipheralblood | blood |
| 37 | chr12:49663200-49667400 | Strong transcription | Pancreas | Pancrea |
| 38 | chr12:49663200-49667800 | Strong transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 39 | chr12:49663200-49667800 | Strong transcription | Primary T helper cells PMA-I stimulated | -- |
| 40 | chr12:49663200-49667800 | Strong transcription | Primary T helper cells fromperipheralblood | blood |
| 41 | chr12:49663200-49667800 | Strong transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 42 | chr12:49663200-49668000 | Strong transcription | Adipose Nuclei | Adipose |
| 43 | chr12:49663200-49668000 | Strong transcription | Colonic Mucosa | Colon |
| 44 | chr12:49663200-49668000 | Strong transcription | Placenta | Placenta |
| 45 | chr12:49663200-49668200 | Strong transcription | Lung | lung |
| 46 | chr12:49663200-49668600 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
| 47 | chr12:49663200-49668600 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
| 48 | chr12:49663200-49669000 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 49 | chr12:49663200-49669200 | Strong transcription | Duodenum Mucosa | Duodenum |
| 50 | chr12:49663400-49667600 | Strong transcription | Rectal Smooth Muscle | rectum |
