Variant report

Variant	rs1154762
Chromosome Location	chr4:21414882-21414883
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006625	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs10018017	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12501359	1.00[JPT][hapmap]
rs12509376	1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes]
rs12512509	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1495523	1.00[JPT][hapmap]
rs1495524	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs1587122	1.00[JPT][hapmap]
rs16870943	1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes]
rs16870996	1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes]
rs1872455	1.00[JPT][hapmap]
rs2322960	1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes]
rs28478326	0.83[AMR][1000 genomes]
rs28582171	0.85[AMR][1000 genomes]
rs9291426	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9884243	1.00[JPT][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005453	chr4:21295066-21454143	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21414600-21415800	Enhancers	HepG2	liver
2	chr4:21414800-21415400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:21414800-21416200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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