Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10006625	1.00[JPT][hapmap]
rs10018017	1.00[JPT][hapmap]
rs1154762	1.00[JPT][hapmap]
rs12501359	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12509376	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12512509	1.00[JPT][hapmap]
rs13107161	1.00[CEU][hapmap]
rs13110425	0.84[CEU][hapmap]
rs13113329	1.00[CEU][hapmap]
rs1390261	1.00[CEU][hapmap]
rs1495516	1.00[CEU][hapmap]
rs1495517	1.00[CEU][hapmap]
rs1495524	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1587122	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16870943	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16870996	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17462325	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17462464	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17521786	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17522576	1.00[CEU][hapmap]
rs1872455	1.00[JPT][hapmap]
rs2322960	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28478326	1.00[ASN][1000 genomes]
rs28582171	1.00[ASN][1000 genomes]
rs35912691	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66861941	0.87[ASN][1000 genomes]
rs6847578	1.00[CEU][hapmap]
rs9291426	1.00[JPT][hapmap]
rs9884243	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005453	chr4:21295066-21454143	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv4267	chr4:21364827-21381632	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1001768	chr4:21371991-21388664	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2760849	chr4:21372003-21386158	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1002862	chr4:21372271-21388664	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21379200-21379400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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