Variant report

Variant	rs6847578
Chromosome Location	chr4:21412106-21412107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13107161	0.95[CEU][hapmap];0.91[YRI][hapmap]
rs13110425	0.84[CEU][hapmap]
rs13113329	0.94[CEU][hapmap];0.91[YRI][hapmap]
rs1390261	0.95[CEU][hapmap];0.91[YRI][hapmap]
rs1495516	0.95[CEU][hapmap]
rs1495517	0.95[CEU][hapmap];0.91[YRI][hapmap]
rs1495523	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1587122	1.00[CEU][hapmap]
rs17462325	0.95[CEU][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17462464	0.95[CEU][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17521786	0.95[CEU][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17522576	0.95[CEU][hapmap];0.91[YRI][hapmap]
rs35912691	0.92[EUR][1000 genomes]
rs4235289	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005453	chr4:21295066-21454143	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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