Variant report

Variant	rs1155178
Chromosome Location	chr8:118039237-118039238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1001646	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12542825	0.82[JPT][hapmap]
rs13280848	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1505525	0.91[JPT][hapmap]
rs1857811	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1995581	0.83[JPT][hapmap]
rs2047963	0.83[JPT][hapmap]
rs2047964	0.91[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2938861	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2938863	0.91[JPT][hapmap]
rs2938864	0.91[CHD][hapmap];0.91[JPT][hapmap]
rs3019880	0.91[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs3019883	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs3019884	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs3019885	0.94[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs3019886	0.83[JPT][hapmap]
rs3019890	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs3020119	0.91[CHD][hapmap];0.91[JPT][hapmap]
rs3020122	0.91[JPT][hapmap]
rs4132473	0.91[JPT][hapmap]
rs4242567	0.83[JPT][hapmap]
rs4242568	0.83[JPT][hapmap]
rs4269571	0.83[JPT][hapmap]
rs4510896	0.83[JPT][hapmap]
rs6469668	0.83[JPT][hapmap]
rs6469669	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6987643	1.00[GIH][hapmap]
rs7009891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7011188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7842705	0.83[JPT][hapmap]
rs9643113	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032976	chr8:118032075-118065907	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118038200-118040600	Weak transcription	Psoas Muscle	Psoas
2	chr8:118038400-118040400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:118039200-118039600	Bivalent Enhancer	Right Atrium	heart

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