Variant report

Variant	rs7009891
Chromosome Location	chr8:118029019-118029020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr8:118028663-118029087	T-47D	breast:	n/a	chr8:118028880-118028895 chr8:118028825-118028837
2	JUND	chr8:118028667-118029195	T-47D	breast:	n/a	chr8:118028992-118029001
3	EP300	chr8:118028594-118029065	T-47D	breast:	n/a	n/a
4	FOXA1	chr8:118028623-118029072	T-47D	breast:	n/a	chr8:118028880-118028895 chr8:118028825-118028837
5	GATA3	chr8:118028578-118029078	T-47D	breast:	n/a	chr8:118028669-118028679
6	GATA3	chr8:118028594-118029162	T-47D	breast:	n/a	chr8:118028669-118028679

Variant related genes	Relation type
RN7SL228P	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1001646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11994402	0.83[YRI][hapmap]
rs13280848	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505525	0.80[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1857811	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995581	0.83[JPT][hapmap]
rs2047963	0.83[JPT][hapmap]
rs2047964	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2938861	0.80[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2938863	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2938864	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs3019880	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs3019883	0.80[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3019884	0.80[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3019885	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3019890	0.80[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3020119	0.91[JPT][hapmap]
rs3020122	0.80[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4132473	0.86[JPT][hapmap]
rs4269571	0.83[JPT][hapmap]
rs6469668	0.83[JPT][hapmap]
rs6469669	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9643113	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv6360	chr8:118005370-118030914	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv527876	chr8:118012265-118037316	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118023600-118031600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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