The 2.0 version of rSNPBase
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Variant report
Variant
rs115585205
Chromosome Location
chr3:159259406-159259407
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:2)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:2 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-RP11-432B6.3.1-9
chr3:159259268-159259491
uc_130_-
2
lnc-IQCJ-2
chr3:159259268-159259491
uc_130_+
No data
No data
No data
Extended variants information (count: 4 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv998949
chr3:158774806-159394550
Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA
4 gene(s)
inside rSNPs
diseases
2
esv3462777
chr3:159255058-159259656
Enhancers
lncRNA
n/a
inside rSNPs
diseases
3
esv1802128
chr3:159257120-159259458
Enhancers
lncRNA
n/a
inside rSNPs
diseases
4
esv1824952
chr3:159257120-159259458
Enhancers
lncRNA
n/a
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links