Variant report

Variant	esv1824952
Chromosome Location	chr3:159257120-159259458
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IQCJ-2	chr3:159259268-159259491	uc_130_+
2	lnc-RP11-432B6.3.1-9	chr3:159259268-159259491	uc_130_-

Extended variants
information (count: 46 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144625224	chr3:159258241-159258242	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs549346440	chr3:159258272-159258273	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs561004755	chr3:159258277-159258278	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs531372424	chr3:159258313-159258314	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs377454062	chr3:159258319-159258320	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs1387693	chr3:159258371-159258372	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs189468515	chr3:159258397-159258398	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs553095423	chr3:159258418-159258419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs425269	chr3:159258502-159258503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs538355453	chr3:159258556-159258557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs192382957	chr3:159258557-159258558	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs566770281	chr3:159258613-159258614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs139380051	chr3:159258655-159258656	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs144097877	chr3:159258690-159258691	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs574264922	chr3:159258728-159258729	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs538500404	chr3:159258751-159258752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs184689146	chr3:159258757-159258758	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs577773732	chr3:159258780-159258781	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs545128734	chr3:159258789-159258790	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs577932058	chr3:159258794-159258795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs13323265	chr3:159258805-159258806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs560567407	chr3:159258819-159258820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs140995644	chr3:159258839-159258840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs142136957	chr3:159258843-159258844	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs561103585	chr3:159258952-159258953	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs540467010	chr3:159258963-159258964	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs567290381	chr3:159258968-159258969	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs79856692	chr3:159258994-159258995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs140111272	chr3:159259003-159259004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs113876718	chr3:159259052-159259053	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs79061247	chr3:159259114-159259115	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs17799480	chr3:159259124-159259125	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs565419909	chr3:159259127-159259128	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs190224446	chr3:159259147-159259148	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs113834919	chr3:159259163-159259164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs181366177	chr3:159259193-159259194	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs2222328	chr3:159259291-159259292	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance disease
38	rs567797653	chr3:159259303-159259304	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs11720783	chr3:159259315-159259316	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs556809525	chr3:159259336-159259337	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs150290178	chr3:159259345-159259346	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
42	rs368458034	chr3:159259346-159259347	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs539014934	chr3:159259393-159259394	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
44	rs554342593	chr3:159259402-159259403	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs115585205	chr3:159259406-159259407	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs1402276	chr3:159259458-159259459	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:53)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21509527	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159258200-159259400	Enhancers	Fetal Brain Male	brain

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