Variant report
| Variant | rs1402276 |
|---|---|
| Chromosome Location | chr3:159259458-159259459 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-432B6.3.1-9 | chr3:159259268-159259491 | uc_130_- |
| 2 | lnc-IQCJ-2 | chr3:159259268-159259491 | uc_130_+ |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:1)
| rs_ID | r2[population] |
|---|---|
| rs16847208 | 0.85[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv3462777 | chr3:159255058-159259656 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 3 | esv1802128 | chr3:159257120-159259458 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 4 | esv1824952 | chr3:159257120-159259458 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1402276 | OTOL1 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
