Variant report

Variant	rs16847208
Chromosome Location	chr3:159256987-159256988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11921554	0.84[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1387692	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402276	0.85[CEU][hapmap]
rs1489909	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489916	0.83[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17798579	0.83[CEU][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2222328	0.89[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34173495	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71312273	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs727234	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv877696	chr3:159184569-159257961	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877697	chr3:159198139-159259124	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv519199	chr3:159248823-159259124	Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv511197	chr3:159252752-159257961	Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv513091	chr3:159254887-159257753	Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3462777	chr3:159255058-159259656	Enhancers	lncRNA	n/a	inside rSNPs	diseases
8	esv3489704	chr3:159256308-159258706	Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3462778	chr3:159256694-159258374	Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3462775	chr3:159256888-159257798	Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv820265	chr3:159256894-159257869	Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3489706	chr3:159256908-159257812	Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3489709	chr3:159256916-159257800	Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3489705	chr3:159256932-159257727	Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3462779	chr3:159256944-159257764	Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3462773	chr3:159256953-159257769	Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3462776	chr3:159256955-159257718	Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3489708	chr3:159256959-159257746	Enhancers	n/a	n/a	inside rSNPs	diseases
19	nsv822303	chr3:159256978-159257652	Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv821438	chr3:159256978-159257696	Enhancers	n/a	n/a	inside rSNPs	diseases
21	nsv822304	chr3:159256978-159257696	Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv4370	chr3:159256979-159257791	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159253600-159257000	Enhancers	Liver	Liver

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