Variant report

Variant	rs11562700
Chromosome Location	chr8:119046340-119046341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119039290..119041869-chr8:119044899..119048314,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11562672	1.00[AMR][1000 genomes]
rs11562701	1.00[AMR][1000 genomes]
rs11562729	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562734	1.00[AMR][1000 genomes]
rs11562767	1.00[AMR][1000 genomes]
rs17476463	1.00[AMR][1000 genomes]
rs17505283	1.00[AMR][1000 genomes]
rs6984750	1.00[AMR][1000 genomes]
rs6997044	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119036600-119046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:119037200-119046600	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:119037600-119046600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:119037600-119046600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:119038200-119046600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:119038400-119046400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:119038400-119046600	Weak transcription	Spleen	Spleen
8	chr8:119038400-119046800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:119038800-119046400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:119039200-119046400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:119039200-119046600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:119039200-119046800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:119039200-119046800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:119039200-119049000	Weak transcription	HUVEC	blood vessel
15	chr8:119040000-119046600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:119040000-119046600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:119040400-119046600	Weak transcription	Fetal Heart	heart
18	chr8:119040600-119052600	Weak transcription	Left Ventricle	heart
19	chr8:119041200-119046800	Enhancers	Osteobl	bone
20	chr8:119041400-119046800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:119041400-119049800	Enhancers	NHDF-Ad	bronchial
22	chr8:119041800-119049800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:119042200-119046800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:119042400-119046600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:119042400-119052000	Weak transcription	Adipose Nuclei	Adipose
26	chr8:119043000-119048400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr8:119043200-119046800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:119043200-119048400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:119043200-119050800	Enhancers	HMEC	breast
30	chr8:119043400-119046800	Weak transcription	Ovary	ovary
31	chr8:119043400-119054400	Weak transcription	Colon Smooth Muscle	Colon
32	chr8:119043400-119054400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:119043600-119046600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:119043600-119046600	Weak transcription	Esophagus	oesophagus
35	chr8:119043600-119046600	Weak transcription	Pancreas	Pancrea
36	chr8:119043800-119046600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:119043800-119046800	Weak transcription	Lung	lung
38	chr8:119044200-119046400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr8:119044200-119046400	Weak transcription	HSMMtube	muscle
40	chr8:119044200-119046400	Weak transcription	NH-A	brain
41	chr8:119044200-119049000	Weak transcription	HepG2	liver
42	chr8:119044400-119046600	Weak transcription	Fetal Lung	lung
43	chr8:119044400-119046800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr8:119044400-119046800	Weak transcription	Stomach Mucosa	stomach
45	chr8:119044400-119051200	Weak transcription	Fetal Kidney	kidney
46	chr8:119044600-119046400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr8:119044600-119046400	Weak transcription	NHLF	lung
48	chr8:119044600-119046600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr8:119044600-119046600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr8:119044600-119046600	Weak transcription	Fetal Muscle Leg	muscle

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