Variant report

Variant	rs17476463
Chromosome Location	chr8:119037382-119037383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11562672	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11562700	1.00[AMR][1000 genomes]
rs11562701	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562729	1.00[AMR][1000 genomes]
rs11562732	1.00[AMR][1000 genomes]
rs11562734	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562767	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17505283	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6984750	1.00[AMR][1000 genomes]
rs6997044	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119024200-119038000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:119025000-119038200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:119029000-119038200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:119030000-119040600	Enhancers	Fetal Intestine Small	intestine
5	chr8:119030200-119037400	Weak transcription	Pancreas	Pancrea
6	chr8:119032400-119043200	Weak transcription	GM12878-XiMat	blood
7	chr8:119033200-119040200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:119033800-119037400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:119033800-119037800	Weak transcription	Colonic Mucosa	Colon
10	chr8:119034200-119038200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr8:119035000-119038400	Enhancers	Rectal Smooth Muscle	rectum
12	chr8:119035000-119038400	Enhancers	Osteobl	bone
13	chr8:119035000-119039000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:119035000-119039200	Enhancers	Duodenum Mucosa	Duodenum
15	chr8:119035000-119040000	Enhancers	NHDF-Ad	bronchial
16	chr8:119035000-119040200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:119035000-119044600	Enhancers	Liver	Liver
18	chr8:119035200-119037400	Weak transcription	Fetal Intestine Large	intestine
19	chr8:119035200-119037400	Enhancers	HUVEC	blood vessel
20	chr8:119035200-119038200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr8:119035200-119038600	Enhancers	Adipose Nuclei	Adipose
22	chr8:119035200-119038600	Enhancers	Fetal Kidney	kidney
23	chr8:119035200-119038600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr8:119035200-119038800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr8:119035200-119039200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr8:119035200-119040400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:119035400-119037400	Enhancers	Fetal Heart	heart
28	chr8:119035400-119038600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:119035400-119038600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:119035400-119040600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:119035600-119037400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:119035600-119037400	Enhancers	HSMM	muscle
33	chr8:119035600-119037400	Enhancers	NH-A	brain
34	chr8:119035600-119037400	Enhancers	NHEK	skin
35	chr8:119035600-119038200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr8:119035600-119038400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr8:119035600-119038400	Enhancers	Colon Smooth Muscle	Colon
38	chr8:119035600-119038600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr8:119035600-119039200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr8:119035600-119039400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:119035600-119039400	Enhancers	HMEC	breast
42	chr8:119035600-119040600	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr8:119035600-119040800	Enhancers	Small Intestine	intestine
44	chr8:119035600-119044200	Enhancers	HepG2	liver
45	chr8:119035800-119037800	Enhancers	NHLF	lung
46	chr8:119035800-119038200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr8:119035800-119040000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr8:119035800-119040400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr8:119035800-119040400	Enhancers	Fetal Lung	lung
50	chr8:119036000-119037400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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