Variant report

Variant	rs11562823
Chromosome Location	chr8:118962152-118962153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11562671	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11562687	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11562703	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11562737	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11562738	1.00[EUR][1000 genomes]
rs11562774	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11562775	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11562776	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11562821	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11562822	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17430645	1.00[CEU][hapmap]
rs17430721	1.00[CEU][hapmap]
rs17430755	1.00[CEU][hapmap]
rs17430819	1.00[CEU][hapmap]
rs17430930	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17430965	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17431118	0.93[EUR][1000 genomes]
rs17431152	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17431166	1.00[CEU][hapmap]
rs17431208	1.00[CEU][hapmap]
rs17431215	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17431249	1.00[CEU][hapmap]
rs17453105	1.00[CEU][hapmap]
rs17453344	1.00[CEU][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17453357	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17453448	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17453560	1.00[CEU][hapmap]
rs17453567	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17453602	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17453651	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17453672	0.93[EUR][1000 genomes]
rs17475946	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17476226	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17476233	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17476254	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17476296	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17504694	0.80[YRI][hapmap]
rs17504988	0.93[EUR][1000 genomes]
rs2086008	0.86[EUR][1000 genomes]
rs2086009	0.86[EUR][1000 genomes]
rs28357284	1.00[CEU][hapmap]
rs4480147	0.87[EUR][1000 genomes]
rs57858101	0.93[EUR][1000 genomes]
rs59628055	0.94[EUR][1000 genomes]
rs60822517	0.94[EUR][1000 genomes]
rs61601333	0.93[EUR][1000 genomes]
rs7004615	0.87[EUR][1000 genomes]
rs7843728	1.00[CEU][hapmap]
rs7843780	1.00[CEU][hapmap]
rs7844054	1.00[CEU][hapmap]
rs7844255	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118954800-118962200	Weak transcription	Right Atrium	heart
2	chr8:118956600-118968000	Weak transcription	Placenta	Placenta
3	chr8:118958000-118963400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:118959000-118966400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:118959000-118967800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:118959000-118967800	Weak transcription	Lung	lung
7	chr8:118959000-118968000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:118959200-118962200	Weak transcription	Aorta	Aorta
9	chr8:118959200-118968000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:118959400-118968400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:118959400-118968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:118959600-118964800	Enhancers	NHLF	lung
13	chr8:118959600-118968400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:118959800-118963000	Enhancers	NH-A	brain
15	chr8:118959800-118965600	Weak transcription	Left Ventricle	heart
16	chr8:118959800-118968400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:118960000-118962200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:118960000-118962800	Enhancers	NHDF-Ad	bronchial
19	chr8:118960000-118965400	Weak transcription	Adipose Nuclei	Adipose
20	chr8:118960200-118962200	Weak transcription	Small Intestine	intestine
21	chr8:118960200-118962600	Weak transcription	Stomach Mucosa	stomach
22	chr8:118960200-118966200	Enhancers	Liver	Liver
23	chr8:118960200-118967200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr8:118960400-118964600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:118960600-118962200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:118960600-118964800	Weak transcription	Brain Germinal Matrix	brain
27	chr8:118960600-118965200	Enhancers	HepG2	liver
28	chr8:118960600-118969200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr8:118960600-118971200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:118960800-118962200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr8:118960800-118962400	Enhancers	NHEK	skin
32	chr8:118960800-118963400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr8:118960800-118965600	Weak transcription	Right Ventricle	heart
34	chr8:118960800-118966600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr8:118961000-118962200	Weak transcription	Gastric	stomach
36	chr8:118961000-118962200	Weak transcription	Psoas Muscle	Psoas
37	chr8:118961000-118962400	Weak transcription	Fetal Heart	heart
38	chr8:118961000-118965800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr8:118961000-118966600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr8:118961200-118962200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:118961200-118962200	Weak transcription	Fetal Intestine Small	intestine
42	chr8:118961200-118962400	Weak transcription	HUVEC	blood vessel
43	chr8:118961200-118962600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr8:118961200-118963800	Weak transcription	Fetal Lung	lung
45	chr8:118961200-118964000	Weak transcription	HSMM	muscle
46	chr8:118961200-118964800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:118961200-118966600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:118961200-118969200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:118961400-118962200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:118961400-118962400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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