Variant report

Variant	rs61601333
Chromosome Location	chr8:119003685-119003686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11562671	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11562687	0.93[EUR][1000 genomes]
rs11562703	0.87[EUR][1000 genomes]
rs11562737	0.87[EUR][1000 genomes]
rs11562738	0.93[EUR][1000 genomes]
rs11562774	0.87[EUR][1000 genomes]
rs11562775	0.87[EUR][1000 genomes]
rs11562776	0.87[EUR][1000 genomes]
rs11562821	0.87[EUR][1000 genomes]
rs11562822	0.87[EUR][1000 genomes]
rs11562823	0.93[EUR][1000 genomes]
rs17430930	0.93[EUR][1000 genomes]
rs17430965	0.87[EUR][1000 genomes]
rs17431118	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17431152	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17431215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17453344	0.93[EUR][1000 genomes]
rs17453357	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17453448	0.87[EUR][1000 genomes]
rs17453567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17453602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17453651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17453672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17475946	0.93[EUR][1000 genomes]
rs17476226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17476233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17476254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17476282	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17476296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17504988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4480147	0.80[EUR][1000 genomes]
rs57858101	1.00[EUR][1000 genomes]
rs59628055	0.87[EUR][1000 genomes]
rs60822517	0.87[EUR][1000 genomes]
rs7004615	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118991200-119004800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:118992800-119007600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:118993200-119012600	Weak transcription	Fetal Brain Male	brain
4	chr8:118994000-119005800	Weak transcription	Psoas Muscle	Psoas
5	chr8:118994000-119031000	Weak transcription	Primary T cells from cord blood	blood
6	chr8:118994200-119004200	Weak transcription	Fetal Stomach	stomach
7	chr8:118997800-119004800	Weak transcription	Fetal Thymus	thymus
8	chr8:118998400-119006800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:118998600-119006600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:118999000-119004600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:118999600-119007400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:119000000-119006400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:119000800-119005200	Enhancers	Pancreas	Pancrea
14	chr8:119000800-119006000	Enhancers	NHLF	lung
15	chr8:119001000-119005400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr8:119001200-119004800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:119001200-119004800	Weak transcription	Ovary	ovary
18	chr8:119001200-119023000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr8:119001400-119004200	Enhancers	Fetal Lung	lung
20	chr8:119001400-119005200	Enhancers	HMEC	breast
21	chr8:119001400-119006400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr8:119001600-119021200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:119001800-119004200	Weak transcription	Gastric	stomach
24	chr8:119002000-119004200	Weak transcription	Fetal Heart	heart
25	chr8:119002000-119004600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:119002000-119004800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr8:119002000-119004800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr8:119002000-119010000	Weak transcription	HSMM	muscle
29	chr8:119002000-119011800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:119002200-119004200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:119002200-119004200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:119002200-119004200	Weak transcription	Fetal Intestine Large	intestine
33	chr8:119002200-119004200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr8:119002200-119004400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr8:119002200-119004400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:119002200-119004400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr8:119002200-119004800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr8:119002200-119004800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr8:119002200-119004800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr8:119002200-119005400	Enhancers	HepG2	liver
41	chr8:119002200-119006800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr8:119002200-119007000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:119002200-119007400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:119002200-119007600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr8:119002200-119010000	Weak transcription	NH-A	brain
46	chr8:119002400-119004200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr8:119002400-119007200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr8:119002600-119003800	Genic enhancers	Osteobl	bone
49	chr8:119002600-119004200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr8:119002600-119004800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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