Variant report

Variant	rs17476282
Chromosome Location	chr8:119012578-119012579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119010926..119015878-chr8:119016577..119020260,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11562671	0.83[YRI][hapmap]
rs17430694	1.00[YRI][hapmap]
rs17430728	1.00[YRI][hapmap]
rs17430749	0.83[YRI][hapmap]
rs17431118	0.85[EUR][1000 genomes]
rs17431152	0.83[YRI][hapmap];0.85[EUR][1000 genomes]
rs17431215	0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17453567	0.83[YRI][hapmap]
rs17453602	0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17453651	0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17453672	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17475666	0.83[YRI][hapmap]
rs17475673	0.83[YRI][hapmap]
rs17476226	0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17476233	0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17476254	0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17476296	0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17503872	0.84[EUR][1000 genomes]
rs17504631	0.83[YRI][hapmap]
rs17504988	0.85[EUR][1000 genomes]
rs2086008	0.92[EUR][1000 genomes]
rs2086009	0.92[EUR][1000 genomes]
rs57858101	0.85[EUR][1000 genomes]
rs61601333	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv512063	chr8:119007302-119012733	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118993200-119012600	Weak transcription	Fetal Brain Male	brain
2	chr8:118994000-119031000	Weak transcription	Primary T cells from cord blood	blood
3	chr8:119001200-119023000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:119001600-119021200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:119003600-119013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:119005000-119016400	Weak transcription	Left Ventricle	heart
7	chr8:119005000-119016400	Weak transcription	Right Atrium	heart
8	chr8:119005000-119017200	Weak transcription	Right Ventricle	heart
9	chr8:119005000-119021200	Weak transcription	Gastric	stomach
10	chr8:119005200-119012600	Weak transcription	Lung	lung
11	chr8:119005200-119012600	Weak transcription	Ovary	ovary
12	chr8:119005200-119012600	Weak transcription	Pancreas	Pancrea
13	chr8:119005800-119012800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:119007600-119013600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr8:119007800-119012600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:119007800-119016400	Weak transcription	Psoas Muscle	Psoas
17	chr8:119008000-119012600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr8:119008200-119012600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:119008200-119012600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:119008400-119016400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:119009800-119014200	Enhancers	NHDF-Ad	bronchial
22	chr8:119010000-119013600	Enhancers	NHLF	lung
23	chr8:119010000-119014200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:119010000-119014200	Enhancers	NH-A	brain
25	chr8:119010000-119014400	Enhancers	Osteobl	bone
26	chr8:119010600-119013000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr8:119010600-119013200	Flanking Active TSS	GM12878-XiMat	blood
28	chr8:119010800-119012600	Enhancers	Liver	Liver
29	chr8:119010800-119013000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:119010800-119013000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr8:119010800-119013200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:119011000-119013600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:119011000-119014200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:119011200-119012600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:119011200-119012600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:119011200-119012600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:119011200-119012600	Weak transcription	Fetal Muscle Leg	muscle
38	chr8:119011200-119012600	Weak transcription	Stomach Mucosa	stomach
39	chr8:119011200-119012600	Enhancers	NHEK	skin
40	chr8:119011200-119012800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:119011200-119013200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:119011200-119013800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:119011200-119016400	Weak transcription	HSMM	muscle
44	chr8:119011400-119014200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:119011600-119013000	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr8:119011600-119013600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:119011800-119013200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr8:119011800-119013400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:119011800-119013600	Enhancers	Fetal Intestine Small	intestine
50	chr8:119011800-119016200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links