Variant report

Variant	rs11562885
Chromosome Location	chr4:118610769-118610770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10516636	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs17515130	1.00[AFR][1000 genomes]
rs17593478	1.00[AFR][1000 genomes]
rs17862973	0.96[AMR][1000 genomes]
rs17862975	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs17865601	0.82[AMR][1000 genomes]
rs17866062	1.00[AFR][1000 genomes]
rs17867524	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes]
rs17867526	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879834	chr4:118532627-118663111	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879835	chr4:118545387-118622573	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3399086	chr4:118598398-118625286	Enhancers	lncRNA	n/a	inside rSNPs	diseases
4	esv3336477	chr4:118598398-118639356	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv879837	chr4:118599194-118650042	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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