Variant report

Variant	rs17515130
Chromosome Location	chr4:118748422-118748423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:118746718..118748894-chr4:118754229..118756238,2	K562	blood:
2	chr4:118740653..118742964-chr4:118748170..118749888,2	K562	blood:

Variant related genes	Relation type
ENSG00000229565	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10516640	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098405	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098406	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1112975	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562832	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562834	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11562842	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11562865	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562873	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562874	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562877	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562878	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562885	1.00[AFR][1000 genomes]
rs11562900	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562902	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562903	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562904	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11562920	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930362	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11934470	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11934576	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11939447	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11939867	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17593478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17862091	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17862094	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17862099	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17862100	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17862103	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17862104	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17862105	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17862106	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17863010	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17863011	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17863014	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17863020	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17863022	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17863024	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17863924	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17863937	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17864925	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17866061	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17867524	1.00[ASW][hapmap]
rs17867559	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17867563	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17867566	0.80[EUR][1000 genomes]
rs17867567	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17867568	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17867569	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17874660	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28512341	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4296744	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4580717	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55775462	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6823636	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72909306	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72909319	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72909324	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72909345	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7661143	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7661680	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7661688	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7670327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7670533	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677900	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7694807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7695044	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7698673	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7699060	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7699167	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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