Variant report

Variant	rs17867566
Chromosome Location	chr4:118720322-118720323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:2201497..2202322-chr4:118720038..118720674,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000167964	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10516640	0.81[ASN][1000 genomes]
rs11098405	0.81[ASN][1000 genomes]
rs11098406	0.81[ASN][1000 genomes]
rs1112975	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11562832	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11562842	0.80[EUR][1000 genomes]
rs11562865	0.81[ASN][1000 genomes]
rs11562873	0.81[ASN][1000 genomes]
rs11562874	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11562877	0.81[ASN][1000 genomes]
rs11562878	0.81[ASN][1000 genomes]
rs11562900	0.81[ASN][1000 genomes]
rs11562902	0.81[ASN][1000 genomes]
rs11562903	0.81[ASN][1000 genomes]
rs11562904	0.81[ASN][1000 genomes]
rs11562920	0.80[EUR][1000 genomes]
rs11930362	0.81[ASN][1000 genomes]
rs11934470	0.81[ASN][1000 genomes]
rs11934576	0.81[ASN][1000 genomes]
rs11939447	0.81[ASN][1000 genomes]
rs11939867	0.81[ASN][1000 genomes]
rs17515130	0.80[EUR][1000 genomes]
rs17593478	0.80[EUR][1000 genomes]
rs17862091	0.81[ASN][1000 genomes]
rs17862094	0.81[ASN][1000 genomes]
rs17862099	0.81[ASN][1000 genomes]
rs17862100	0.81[ASN][1000 genomes]
rs17862103	0.81[ASN][1000 genomes]
rs17862104	0.81[ASN][1000 genomes]
rs17862105	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17862106	0.81[ASN][1000 genomes]
rs17863010	0.81[ASN][1000 genomes]
rs17863011	0.81[ASN][1000 genomes]
rs17863014	0.81[ASN][1000 genomes]
rs17863020	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17863022	0.81[ASN][1000 genomes]
rs17863024	0.81[ASN][1000 genomes]
rs17863924	0.81[ASN][1000 genomes]
rs17863937	0.81[ASN][1000 genomes]
rs17866061	0.80[EUR][1000 genomes]
rs17866062	0.81[EUR][1000 genomes]
rs17867559	0.81[ASN][1000 genomes]
rs17867563	0.81[ASN][1000 genomes]
rs17867567	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17867568	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17867569	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17874660	0.81[ASN][1000 genomes]
rs28512341	0.81[ASN][1000 genomes]
rs6823636	0.81[ASN][1000 genomes]
rs72909306	0.81[ASN][1000 genomes]
rs72909319	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72909324	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72909345	0.81[ASN][1000 genomes]
rs7661143	0.81[ASN][1000 genomes]
rs7661680	0.81[ASN][1000 genomes]
rs7661688	0.81[ASN][1000 genomes]
rs7670533	0.80[EUR][1000 genomes]
rs7677900	0.81[ASN][1000 genomes]
rs7698673	0.81[ASN][1000 genomes]
rs7699060	0.81[ASN][1000 genomes]
rs7699167	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118716000-118721800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:118719400-118720400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:118719400-118720600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:118719800-118720400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:118720000-118720600	Active TSS	A549	lung
6	chr4:118720200-118723400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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