Variant report

Variant	rs11562878
Chromosome Location	chr4:118714940-118714941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	4:118667424-118683756..4:118706981-118715929	Hela-S3	cervix:
2	4:118454469-118464115..4:118706981-118715929	H1-hESC	embryonic stem cell:	embryo
3	4:118706981-118715929..4:118722741-118723956	H1-hESC	embryonic stem cell:	embryo
4	4:118559839-118566258..4:118706981-118715929	Hela-S3	cervix:
5	4:118414019-118416561..4:118706981-118715929	Hela-S3	cervix:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10516636	0.85[CEU][hapmap]
rs10516640	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112975	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562832	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562834	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11562842	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562843	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11562865	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562873	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562874	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562900	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562902	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562903	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562920	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11930362	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939447	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17515130	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17593478	0.85[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17593534	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs17862091	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862094	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862099	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862100	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862103	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862104	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862105	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862106	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862975	0.85[CEU][hapmap]
rs17863010	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863020	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863022	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863024	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863924	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863937	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864925	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17866061	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17866062	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17867524	0.85[CEU][hapmap]
rs17867559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867566	0.81[ASN][1000 genomes]
rs17867567	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867568	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867569	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17874660	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28512341	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525284	0.93[ASN][1000 genomes]
rs6823636	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909319	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909324	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909345	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670327	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7670533	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7677900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694807	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7695044	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7698673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699060	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118712200-118719800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:118714600-118715600	Enhancers	Fetal Lung	lung
3	chr4:118714600-118715800	Enhancers	Dnd41	blood
4	chr4:118714600-118715800	Enhancers	NHEK	skin
5	chr4:118714600-118716400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:118714800-118715600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:118714800-118715800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:118714800-118716000	Enhancers	HMEC	breast
9	chr4:118714800-118716400	Enhancers	Stomach Mucosa	stomach

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