Variant report

Variant	rs11562842
Chromosome Location	chr4:118737484-118737485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	4:118320200-118324249..4:118735152-118737645	GM12878	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10516640	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11098405	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11098406	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1112975	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562832	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562834	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11562865	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562873	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562874	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562877	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562878	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562900	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562902	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562903	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562904	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562920	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11930362	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11934470	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11934576	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11939447	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11939867	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17515130	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17593478	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17593534	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17862091	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17862094	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17862099	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17862100	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17862103	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17862104	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17862105	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17862106	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863010	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863011	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863014	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863020	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863022	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863024	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863924	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17863937	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17864925	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17866061	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17866062	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867559	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17867563	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17867566	0.80[EUR][1000 genomes]
rs17867567	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17867568	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17867569	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17874660	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28512341	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4296744	0.92[EUR][1000 genomes]
rs4580717	0.93[EUR][1000 genomes]
rs55775462	0.93[EUR][1000 genomes]
rs6823636	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72909306	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72909319	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72909324	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72909345	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7661143	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7661680	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7661688	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7670327	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7670533	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7677900	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7694807	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7695044	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7698673	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7699060	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7699167	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118734800-118737600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:118734800-118737600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:118735600-118738000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:118735800-118737600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:118736000-118739600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:118736200-118739800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:118737000-118739600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:118737000-118739600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:118737200-118739400	Enhancers	Dnd41	blood

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