Variant report

Variant	rs17862099
Chromosome Location	chr4:118718470-118718471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10516636	0.86[CEU][hapmap]
rs10516640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098405	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098406	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112975	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562832	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562834	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11562842	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11562843	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11562865	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562873	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562874	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562877	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562878	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562900	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562902	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562904	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11562920	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11930362	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934470	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934576	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939447	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939867	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17515130	0.85[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17593478	0.86[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17593534	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs17862091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862100	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862104	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862105	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862106	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862975	0.85[CEU][hapmap]
rs17863010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863011	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863014	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863020	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863022	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863024	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863924	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863937	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864925	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17866061	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17866062	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17867524	0.85[CEU][hapmap]
rs17867559	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867563	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867566	0.81[ASN][1000 genomes]
rs17867567	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867568	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867569	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17874660	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28512341	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525284	0.93[ASN][1000 genomes]
rs4296744	0.81[AMR][1000 genomes]
rs4580717	0.81[AMR][1000 genomes]
rs6823636	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909306	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909319	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909324	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909345	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661143	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661680	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661688	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670327	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7670533	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7677900	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694807	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7695044	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7698673	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699060	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699167	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118712200-118719800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:118716000-118721800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:118717600-118718800	Enhancers	Stomach Mucosa	stomach
4	chr4:118717800-118718800	Enhancers	Dnd41	blood
5	chr4:118718000-118719200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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