Variant report

Variant	rs11562887
Chromosome Location	chr4:118561956-118561957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	4:118559839-118566258..4:118659345-118667424	GM12878	blood:
2	4:118327401-118331084..4:118559839-118566258	GM12878	blood:
3	4:118291537-118294071..4:118559839-118566258	H1-hESC	embryonic stem cell:	embryo
4	4:118334763-118353595..4:118559839-118566258	H1-hESC	embryonic stem cell:	embryo
5	4:118553216-118555555..4:118559839-118566258	Hela-S3	cervix:
6	4:118357351-118360885..4:118559839-118566258	GM12878	blood:
7	4:118499433-118507619..4:118559839-118566258	K562	blood:
8	4:118558912-118559839..4:118559839-118566258	Hela-S3	cervix:
9	4:118559839-118566258..4:118706981-118715929	Hela-S3	cervix:
10	4:118319405-118319911..4:118559839-118566258	H1-hESC	embryonic stem cell:	embryo
11	4:118320200-118324249..4:118559839-118566258	GM12878	blood:
12	4:118383653-118385442..4:118559839-118566258	H1-hESC	embryonic stem cell:	embryo

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10084937	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11933125	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11945061	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507177	0.84[EUR][1000 genomes]
rs12511161	0.84[EUR][1000 genomes]
rs12511367	0.84[EUR][1000 genomes]
rs12512192	0.84[EUR][1000 genomes]
rs17862974	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863883	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864933	0.84[EUR][1000 genomes]
rs17867525	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1906857	0.88[EUR][1000 genomes]
rs6828594	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72903426	0.85[EUR][1000 genomes]
rs7699563	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923441	0.88[EUR][1000 genomes]
rs9991400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879834	chr4:118532627-118663111	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879835	chr4:118545387-118622573	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879836	chr4:118551144-118587270	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118559000-118574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:118561600-118563200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links