Variant report
| Variant | rs923441 |
|---|---|
| Chromosome Location | chr4:118544344-118544345 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11562887 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs11933125 | 0.80[EUR][1000 genomes] |
| rs11945061 | 0.82[EUR][1000 genomes] |
| rs12507177 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12507182 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12511161 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12511367 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12512192 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17862974 | 0.88[EUR][1000 genomes] |
| rs17863883 | 0.88[EUR][1000 genomes] |
| rs17864933 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17867525 | 0.80[EUR][1000 genomes] |
| rs1906857 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6828594 | 0.80[EUR][1000 genomes] |
| rs72903426 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7699563 | 0.88[EUR][1000 genomes] |
| rs9991400 | 1.00[CEU][hapmap];0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879833 | chr4:118510812-118556306 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv879834 | chr4:118532627-118663111 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv436963 | chr4:118543358-118547398 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:118543200-118557400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
