Variant report

Variant	rs11562921
Chromosome Location	chr4:118740650-118740651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11562845	1.00[AMR][1000 genomes]
rs11562870	1.00[AMR][1000 genomes]
rs11562883	1.00[AMR][1000 genomes]
rs17049435	1.00[AMR][1000 genomes]
rs17049437	1.00[AMR][1000 genomes]
rs17049439	1.00[AMR][1000 genomes]
rs17865042	1.00[AMR][1000 genomes]
rs17865118	1.00[AMR][1000 genomes]
rs17865507	1.00[AMR][1000 genomes]
rs17867083	1.00[AMR][1000 genomes]
rs17869788	1.00[AMR][1000 genomes]
rs17875086	1.00[AMR][1000 genomes]
rs72909384	1.00[AMR][1000 genomes]
rs72911322	1.00[AMR][1000 genomes]
rs72911342	1.00[AMR][1000 genomes]
rs9993729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118739600-118741000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:118740200-118742000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:118740200-118742400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:118740200-118742400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:118740200-118742400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:118740400-118742800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:118740600-118741000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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