Variant report

Variant	rs17865507
Chromosome Location	chr4:118707840-118707841
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11562845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562870	1.00[AMR][1000 genomes]
rs11562883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11562921	1.00[AMR][1000 genomes]
rs17049435	1.00[AMR][1000 genomes]
rs17049437	1.00[AMR][1000 genomes]
rs17049439	1.00[AMR][1000 genomes]
rs17865042	1.00[AMR][1000 genomes]
rs17865118	1.00[AMR][1000 genomes]
rs17865338	1.00[AMR][1000 genomes]
rs17867083	1.00[AMR][1000 genomes]
rs17869325	1.00[AMR][1000 genomes]
rs17869788	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17875086	1.00[AMR][1000 genomes]
rs72909384	1.00[AMR][1000 genomes]
rs72911322	1.00[AMR][1000 genomes]
rs72911342	1.00[AMR][1000 genomes]
rs9993729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118705600-118714800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:118707600-118708400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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