Variant report

Variant	rs17865338
Chromosome Location	chr4:118545708-118545709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11562845	1.00[AMR][1000 genomes]
rs11562883	1.00[AMR][1000 genomes]
rs17865042	1.00[AMR][1000 genomes]
rs17865118	1.00[AMR][1000 genomes]
rs17865507	1.00[AMR][1000 genomes]
rs17866969	1.00[AMR][1000 genomes]
rs17867083	1.00[AMR][1000 genomes]
rs17867162	1.00[AMR][1000 genomes]
rs17868930	1.00[AMR][1000 genomes]
rs17869319	1.00[AMR][1000 genomes]
rs17869325	1.00[AMR][1000 genomes]
rs17869520	1.00[AMR][1000 genomes]
rs17869788	1.00[AMR][1000 genomes]
rs17875086	1.00[AMR][1000 genomes]
rs7684698	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879833	chr4:118510812-118556306	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879834	chr4:118532627-118663111	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv436963	chr4:118543358-118547398	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv879835	chr4:118545387-118622573	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118543200-118557400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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