Variant report
| Variant | rs11563015 |
|---|---|
| Chromosome Location | chr2:234721532-234721533 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000185038 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10185631 | 0.85[JPT][hapmap] |
| rs11562981 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs11563235 | 0.86[CHB][hapmap] |
| rs11563238 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs11563239 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs11563240 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs13416326 | 0.86[JPT][hapmap] |
| rs2270856 | 0.85[JPT][hapmap] |
| rs28898622 | 1.00[AMR][1000 genomes] |
| rs28900671 | 1.00[AMR][1000 genomes] |
| rs28900968 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs28900970 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs28900972 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs28902188 | 1.00[AMR][1000 genomes] |
| rs28946892 | 1.00[AMR][1000 genomes] |
| rs3755317 | 0.86[JPT][hapmap] |
| rs873478 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013712 | chr2:234558457-235495825 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv532476 | chr2:234595695-235134381 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:234713200-234731400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
