Variant report

Variant	rs28902188
Chromosome Location	chr2:234879788-234879789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10432393	1.00[EUR][1000 genomes]
rs10490015	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs11563015	1.00[AMR][1000 genomes]
rs11563061	1.00[EUR][1000 genomes]
rs11563217	1.00[EUR][1000 genomes]
rs11563219	1.00[EUR][1000 genomes]
rs11563220	1.00[EUR][1000 genomes]
rs28900671	1.00[AMR][1000 genomes]
rs28901602	1.00[EUR][1000 genomes]
rs28901604	1.00[EUR][1000 genomes]
rs28901605	1.00[EUR][1000 genomes]
rs28901606	1.00[YRI][hapmap]
rs28901607	1.00[EUR][1000 genomes]
rs28901609	1.00[EUR][1000 genomes]
rs28901612	1.00[YRI][hapmap]
rs28901616	1.00[YRI][hapmap]
rs28901620	1.00[EUR][1000 genomes]
rs28901622	1.00[YRI][hapmap]
rs28901623	1.00[YRI][hapmap]
rs28901638	1.00[YRI][hapmap]
rs28901644	1.00[EUR][1000 genomes]
rs28901648	1.00[EUR][1000 genomes]
rs28902176	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs28902190	1.00[YRI][hapmap]
rs28902229	1.00[AMR][1000 genomes]
rs28904005	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:234876000-234882200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:234876400-234882000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:234876400-234882200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:234876400-234883400	Weak transcription	HSMMtube	muscle
8	chr2:234879000-234881200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:234879400-234880200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:234879600-234882000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links