Variant report

Variant	rs28901648
Chromosome Location	chr2:234857399-234857400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10432393	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10490015	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11563061	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563217	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563219	1.00[EUR][1000 genomes]
rs11563220	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs11890045	1.00[AMR][1000 genomes]
rs1392605	1.00[AMR][1000 genomes]
rs1500478	1.00[AMR][1000 genomes]
rs28900709	1.00[AMR][1000 genomes]
rs28900717	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28901602	1.00[EUR][1000 genomes]
rs28901604	1.00[EUR][1000 genomes]
rs28901605	1.00[EUR][1000 genomes]
rs28901607	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs28901609	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs28901620	0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28901624	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28901644	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28902171	1.00[AMR][1000 genomes]
rs28902176	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28902178	1.00[AMR][1000 genomes]
rs28902188	1.00[EUR][1000 genomes]
rs28902477	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28946906	1.00[AMR][1000 genomes]
rs61415915	1.00[AMR][1000 genomes]
rs61650568	1.00[AMR][1000 genomes]
rs73110898	1.00[AMR][1000 genomes]
rs73112612	1.00[AMR][1000 genomes]
rs73112625	1.00[AMR][1000 genomes]
rs73112628	1.00[AMR][1000 genomes]
rs73124593	1.00[AMR][1000 genomes]
rs7564831	0.86[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234849600-234873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234857200-234857600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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