Variant report
| Variant | rs61650568 |
|---|---|
| Chromosome Location | chr2:234713173-234713174 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:234707954..234710332-chr2:234710792..234713677,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11563217 | 1.00[AMR][1000 genomes] |
| rs11890045 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1392605 | 1.00[AMR][1000 genomes] |
| rs1500478 | 1.00[AMR][1000 genomes] |
| rs28900709 | 1.00[AMR][1000 genomes] |
| rs28900717 | 1.00[AMR][1000 genomes] |
| rs28901624 | 1.00[AMR][1000 genomes] |
| rs28901648 | 1.00[AMR][1000 genomes] |
| rs28902171 | 1.00[AMR][1000 genomes] |
| rs28902178 | 1.00[AMR][1000 genomes] |
| rs28902477 | 1.00[AMR][1000 genomes] |
| rs28946906 | 1.00[AMR][1000 genomes] |
| rs61415915 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73110898 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73112612 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73112625 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73112628 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013712 | chr2:234558457-235495825 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv532476 | chr2:234595695-235134381 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:234712600-234713200 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
