Variant report

Variant	rs1500478
Chromosome Location	chr2:234707347-234707348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000241635	Chromatin interaction
ENSG00000244474	Chromatin interaction
ENSG00000244122	Chromatin interaction
ENSG00000241119	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11563217	1.00[AMR][1000 genomes]
rs11890045	1.00[AMR][1000 genomes]
rs1392605	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28900709	1.00[AMR][1000 genomes]
rs28900717	1.00[AMR][1000 genomes]
rs28901624	1.00[AMR][1000 genomes]
rs28901648	1.00[AMR][1000 genomes]
rs28902171	1.00[AMR][1000 genomes]
rs28902178	1.00[AMR][1000 genomes]
rs28902477	1.00[AMR][1000 genomes]
rs28946906	1.00[AMR][1000 genomes]
rs61415915	1.00[AMR][1000 genomes]
rs61650568	1.00[AMR][1000 genomes]
rs73110898	1.00[AMR][1000 genomes]
rs73112612	1.00[AMR][1000 genomes]
rs73112625	1.00[AMR][1000 genomes]
rs73112628	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv1811811	chr2:234633964-234709430	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv460137	chr2:234701686-234708629	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv584708	chr2:234701686-234708629	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234703400-234708400	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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