Variant report

Variant	rs28901607
Chromosome Location	chr2:234834437-234834438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10432393	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10490015	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs11563061	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11563217	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs11563219	1.00[EUR][1000 genomes]
rs11563220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28901602	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28901604	1.00[EUR][1000 genomes]
rs28901605	1.00[EUR][1000 genomes]
rs28901609	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28901620	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs28901644	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs28901648	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs28902176	0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs28902188	1.00[EUR][1000 genomes]
rs3796087	1.00[AFR][1000 genomes]
rs7564831	0.93[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234832600-234834800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:234833600-234834800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:234834400-234838000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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