Variant report
| Variant | rs28904005 |
|---|---|
| Chromosome Location | chr2:234978150-234978151 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10929333 | 0.98[ASN][1000 genomes] |
| rs11562947 | 0.96[ASN][1000 genomes] |
| rs11563197 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11884288 | 0.96[ASN][1000 genomes] |
| rs11885740 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs1507517 | 0.96[ASN][1000 genomes] |
| rs1507518 | 0.96[ASN][1000 genomes] |
| rs1507519 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs17864799 | 0.96[ASN][1000 genomes] |
| rs17864800 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs17864801 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs17865702 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs17865707 | 0.96[ASN][1000 genomes] |
| rs17865708 | 0.96[ASN][1000 genomes] |
| rs17866610 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs17869095 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs17869099 | 0.96[ASN][1000 genomes] |
| rs28902188 | 1.00[AMR][1000 genomes] |
| rs28902229 | 1.00[AMR][1000 genomes] |
| rs28903699 | 0.96[ASN][1000 genomes] |
| rs28903985 | 1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28904000 | 0.96[ASN][1000 genomes] |
| rs34179683 | 0.88[ASN][1000 genomes] |
| rs35211354 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013712 | chr2:234558457-235495825 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv532476 | chr2:234595695-235134381 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 3 | nsv834571 | chr2:234929288-235110332 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:234972600-234985600 | Strong transcription | Liver | Liver |
