Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28900714	0.80[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs28900723	0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs28900724	0.80[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs28900976	1.00[JPT][hapmap]
rs28900978	0.86[ASN][1000 genomes]
rs28901612	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28901616	0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs28901617	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs28901622	1.00[YRI][hapmap]
rs28901623	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28901627	0.85[AFR][1000 genomes]
rs28901638	1.00[YRI][hapmap]
rs28901647	0.85[AFR][1000 genomes]
rs28902188	1.00[YRI][hapmap]
rs28902190	1.00[YRI][hapmap]
rs28902471	0.93[ASN][1000 genomes]
rs28948394	0.86[ASN][1000 genomes]
rs3771333	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs56262514	0.88[ASN][1000 genomes]
rs58339824	0.95[ASN][1000 genomes]
rs60573749	0.95[ASN][1000 genomes]
rs73118753	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234832600-234834800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:234833000-234834400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:234833000-234834400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:234833600-234834800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:234834000-234834400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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