Variant report

Variant	rs11563323
Chromosome Location	chr7:27388060-27388061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11563991	0.91[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11563992	0.92[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11979443	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428890	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17428897	0.92[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17428974	0.92[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17429016	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17429023	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17438674	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075452	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27387200-27390200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:27388000-27389400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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