Variant report

Variant	rs17438674
Chromosome Location	chr7:27386591-27386592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27385251..27387696-chr7:27388686..27392238,3	K562	blood:
2	chr7:27274118..27275795-chr7:27385086..27386889,2	MCF-7	breast:
3	chr7:27385251..27387696-chr7:27388686..27391421,2	K562	blood:
4	chr7:27384042..27388224-chr7:27459528..27463800,5	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11563323	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11563991	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11563992	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11979443	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17428890	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17428897	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17428974	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17429016	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17429023	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73075452	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27384400-27387200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:27385400-27387200	Enhancers	Fetal Intestine Large	intestine
4	chr7:27385600-27386600	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr7:27385600-27386800	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:27385600-27387200	Enhancers	HMEC	breast
7	chr7:27385600-27387400	Enhancers	Fetal Lung	lung
8	chr7:27385800-27386800	Enhancers	Fetal Intestine Small	intestine
9	chr7:27386000-27386600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:27386000-27386600	Enhancers	Osteobl	bone
11	chr7:27386200-27386600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:27386200-27386600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:27386200-27386600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:27386200-27386600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:27386200-27386600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:27386200-27386600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:27386200-27386600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:27386200-27386600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr7:27386200-27386600	Enhancers	Rectal Smooth Muscle	rectum
20	chr7:27386200-27386800	Active TSS	A549	lung
21	chr7:27386200-27386800	Enhancers	NHDF-Ad	bronchial
22	chr7:27386200-27387000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:27386200-27387000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:27386200-27387000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:27386200-27387000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:27386200-27387000	Flanking Active TSS	Hela-S3	cervix
27	chr7:27386200-27387200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr7:27386200-27387200	Enhancers	Placenta	Placenta
29	chr7:27386200-27387200	Enhancers	Fetal Stomach	stomach
30	chr7:27386200-27387200	Enhancers	Stomach Mucosa	stomach
31	chr7:27386400-27386600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr7:27386400-27386600	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr7:27386400-27386600	Active TSS	Stomach Smooth Muscle	stomach
34	chr7:27386400-27386800	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr7:27386400-27386800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:27386400-27386800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:27386400-27386800	Active TSS	Brain Anterior Caudate	brain
38	chr7:27386400-27387000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:27386400-27387000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:27386400-27387000	Enhancers	NHEK	skin
41	chr7:27386400-27387200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:27386400-27387200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:27386400-27387200	Enhancers	Adipose Nuclei	Adipose
44	chr7:27386400-27387400	Enhancers	Colon Smooth Muscle	Colon

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