Variant report
| Variant | rs11563692 |
|---|---|
| Chromosome Location | chr7:126843169-126843170 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126842484..126844799-chr7:126846564..126849446,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11563693 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
| rs11971948 | 0.94[CEU][hapmap];0.92[YRI][hapmap] |
| rs11974109 | 0.94[CEU][hapmap];0.92[YRI][hapmap] |
| rs11980964 | 0.94[CEU][hapmap];0.92[YRI][hapmap] |
| rs17862315 | 0.93[CEU][hapmap] |
| rs17862317 | 0.94[CEU][hapmap];0.80[YRI][hapmap] |
| rs17863227 | 0.94[CEU][hapmap];0.92[YRI][hapmap] |
| rs17863239 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
| rs17864149 | 0.94[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs17867782 | 0.94[CEU][hapmap] |
| rs2237794 | 0.94[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs2237796 | 0.94[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs2283097 | 0.94[CEU][hapmap];0.91[YRI][hapmap] |
| rs2299543 | 0.94[CEU][hapmap];0.92[YRI][hapmap] |
| rs2299545 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
| rs2299548 | 0.94[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs2299550 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
| rs3808118 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
| rs3808119 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
| rs6956914 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
| rs6975409 | 0.94[CEU][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv889190 | chr7:126841090-126856057 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
