Variant report

Variant	rs17862315
Chromosome Location	chr7:126827466-126827467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11563692	0.93[CEU][hapmap]
rs11563693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11971948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11974109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11980964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1419427	0.82[JPT][hapmap]
rs17862317	1.00[CEU][hapmap]
rs17863227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17863239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2237794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2283097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299543	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap]
rs2299545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3808118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs3808119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3824009	0.82[JPT][hapmap]
rs6956914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6975409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126826600-126827800	Enhancers	Thymus	Thymus
2	chr7:126827400-126828400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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